PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008094
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 229aa    MW: 26372.4 Da    PI: 9.9025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-39638PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-17130217196
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k ++ s+v+   +l lp  f++++  +k ++  +tl de+g +W  k+    ++ +  l++GWk F+++++L +gD ++F+l++ + f  +v +
  Lsa008094 130 FLKPMLISHVSGGFWLGLPVYFCKSYL-PK-RDEIMTLVDENGDEWPTKY--LPRKTG--LSGGWKAFAEDHKLVDGDALIFQLIKPTVF--KVYI 217
                89999*********************4.32.4568***************..555544..************************997777..5555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-23122220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-26123221IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-28128219No hitNo description
PROSITE profilePS5086313.563130221IPR003340B3 DNA binding domain
PfamPF023628.1E-16130218IPR003340B3 DNA binding domain
SMARTSM010195.6E-24130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVAPKKVNYE ECRQKRLEEN KKRMEELKLN ALAQSLRIIS TPKPSPMKKV NRTPRKPLDL  60
SSVRRSNRVA DKPPPSYKEI LLEPLGMRRS YGMKVRDLSN RIYASDEDRE YASERAEELH  120
SKLQPDFPSF LKPMLISHVS GGFWLGLPVY FCKSYLPKRD EIMTLVDENG DEWPTKYLPR  180
KTGLSGGWKA FAEDHKLVDG DALIFQLIKP TVFKVYITRV NQAGDSDDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016539590.11e-109PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M38e-84Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A103XM051e-123A0A103XM05_CYNCS; B3 DNA binding domain-containing protein
STRINGPGSC0003DMT4000663231e-109(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-85B3 family protein